Co-reporter:Sai Wang, Liqin Zhang, Shuo Wan, Sena Cansiz, Cheng Cui, Yuan Liu, Ren Cai, Chengyi Hong, I-Ting Teng, Muling Shi, Yuan Wu, Yiyang Dong, and Weihong Tan
ACS Nano April 25, 2017 Volume 11(Issue 4) pp:3943-3943
Publication Date(Web):March 13, 2017
DOI:10.1021/acsnano.7b00373
Exosomes are extracellular vesicles (50–100 nm) circulating in biofluids as intercellular signal transmitters. Although the potential of cancerous exosomes as tumor biomarkers is promising, sensitive and rapid detection of exosomes remains challenging. Herein, we combined the strengths of advanced aptamer technology, DNA-based nanostructure, and portable electrochemical devices to develop a nanotetrahedron (NTH)-assisted aptasensor for direct capture and detection of hepatocellular exosomes. The oriented immobilization of aptamers significantly improved the accessibility of an artificial nucleobase-containing aptamer to suspended exosomes, and the NTH-assisted aptasensor could detect exosomes with 100-fold higher sensitivity when compared to the single-stranded aptamer-functionalized aptasensor. The present study provides a proof-of-concept for sensitive and efficient quantification of tumor-derived exosomes. We thus expect the NTH-assisted electrochemical aptasensor to become a powerful tool for comprehensive exosome studies.Keywords: aptasensor; electrochemistry; exosomes; expanded nucleotide; nanotetrahedron;
Co-reporter:Yali Tang;Jichuan Zhang;Jia-Hui Liu;Ilyar Gapparov;Sai Wang;Haijia Su;Tianwei Tan
Analytical Methods (2009-Present) 2017 vol. 9(Issue 7) pp:1133-1140
Publication Date(Web):2017/02/16
DOI:10.1039/C6AY03412H
Herein, an ultrasensitive and selective assay for antibiotic tetracycline (TC) was developed based on an aptamer and graphene oxide (GO). The assay was designed based on the protection effect of the aptamer on GO due to aggregation. When the GO-based aptasensor was incubated with TC, TC could capture the TC aptamer from GO, leading to the aggregation of GO in a high salt solution. The increase in size and decrease in zeta-potential can be detected by adding TC in the assay. A linear relationship between the optical response and the logarithm concentration of TC was observed after centrifugation. The detection range was 0.002 to 20 ng mL−1 and the detection limit was 0.001 ng mL−1 (S/N = 3). The recoveries of TC in honey samples (0.001 mg kg−1, 0.01 mg kg−1 and 0.1 mg kg−1) were from 82.5% to 117%.
Co-reporter:Sai Wang, Song Gao, Shuai Sun, Yan Yang, Yang Zhang, Jiahui Liu, Yiyang Dong, Haijia Su and Tianwei Tan
RSC Advances 2016 vol. 6(Issue 51) pp:45645-45651
Publication Date(Web):04 May 2016
DOI:10.1039/C6RA08262A
Based on the study of intrinsic conformational structure-dependent molecular recognition between tetracycline (TC) and anti-TC aptamers, herein, we focus on the classic gold nanoparticle (AuNPs)-based colorimetric aptasensor. We adopt a 40 mer T-rich aptamer with considerations of stand length, primary sequence, and conformational structure. A computational analysis was applied to further decipher the molecular binding property among the AuNPs, aptamer, and TC. The short length of the aptamer assisted easy adsorption of the aptamer onto the surface of AuNPs. The rich T bases with less affinity onto the surface of AuNPs contributed to the sensitivity of the biosensor. The computational analysis revealed that the binding sites on the 40 mer aptamer distributed closely, and the aptamer had a flexible conformational structure to be adsorbed onto or desorbed from the surface of AuNPs. After detailed optimization, we developed a label-free colorimetric aptasensor which provided both visual and spectrographic quantitation for TC detection in a honey sample with high specificity and a limit of detection (LOD) of 12.4 ng mL−1. The present assay can be developed as a simple and efficient method for basic on-site screening for TC residue in honey products, both visually and quantitatively. Moreover, the present study proves the concept for TC aptasensor development with a successful prediction practice and may lay the foundation for the development of other aptasensors.
Co-reporter:Sai Wang, Jiahui Liu, Yanxia Wu, Yawen You, Jingyi He, Jichuan Zhang, Liqun Zhang, Yiyang Dong
Analytical Biochemistry 2016 Volume 499() pp:34-42
Publication Date(Web):15 April 2016
DOI:10.1016/j.ab.2016.01.015
Abstract
Commercial natural rubber is traditionally supplied by Hevea brasiliensis, but now there is a big energy problem because of the limited resource and increasing demand. Intensive study of key rubber-related substances is urgently needed for further research of in vitro biosynthesis of natural rubber. Natural rubber is biosynthesized on the surface of rubber particles. A membrane protein called small rubber particle protein (SRPP) is a key protein associated closely with rubber biosynthesis; however, SRPP in different plants has been only qualitatively studied, and there are no quantitative reports so far. In this work, H. brasiliensis was chosen as a model plant. The microscopic distribution of SRPP on the rubber particles during the washing process was investigated by transmission electron microscopy–immunogold labeling. A label-free surface plasmon resonance (SPR) immunosensor was developed to quantify SRPP in H. brasiliensis for the first time. The immunosensor was then used to rapidly detect and analyze SRPP in dandelions and prickly lettuce latex samples. The label-free SPR immunosensor can be a desirable tool for rapid quantitation of the membrane protein SRPP, with excellent assay efficiency, high sensitivity, and high specificity. The method lays the foundation for further study of the functional relationship between SRPP and natural rubber content.
Co-reporter:Sai Wang, Jiahui Liu, Yiyang Dong, Haijia Su and Tianwei Tan
RSC Advances 2015 vol. 5(Issue 66) pp:53796-53801
Publication Date(Web):11 Jun 2015
DOI:10.1039/C5RA08050A
Different aptamers towards one target molecule can be selected by Systematic Evolution of Ligands by Exponential Enrichment (SELEX), however, not all aptamers have real world practicability. In this study, conformational structure-dependent molecular recognition of two aptamers towards tetracycline (TC), 76 mer and 40 mer, was studied both quantitatively and computationally. Two formats of competitive enzyme-linked aptamer assay (ELAA), a molecular docking module and Isothermal Titration Calorimeter (ITC) analysis were used to further investigate the two selected aptamers. With longer strand length, more G, C bases, and more recognition sites for TC, the 76 mer aptamer showed better performance than the 40 mer aptamer. Deciphering the relevance of aptamers with different molecular characteristics towards one target molecule can furnish as a referral guidance for aptamer selection and further practical application.
Co-reporter:Liya Zhang;Wei Yong;Jiahui Liu;Sai Wang
Journal of The American Society for Mass Spectrometry 2015 Volume 26( Issue 8) pp:1423
Publication Date(Web):2015 August
DOI:10.1007/s13361-015-1184-0
Co-reporter:Liya Zhang;Wei Yong;Jiahui Liu;Sai Wang
Journal of The American Society for Mass Spectrometry 2015 Volume 26( Issue 8) pp:1414-1422
Publication Date(Web):2015 August
DOI:10.1007/s13361-015-1142-x
The direct analysis in real time (DART) ionization source coupled with quadrupole time-of-flight tandem mass spectrometry (Q-TOF MS/MS) system has the capability to desorb analytes directly from samples without sample cleanup or chromatographic separation. In this work, a method based on DART/Q-TOF MS/MS has been developed for rapid identification of dicyandiamide (DCD) present in powdered milk. Simple sample extraction procedure employing acetonitrile-water (80:20, v/v) mixture was followed by direct, high-throughput determination of sample extracts spread on a steel mesh of the transmission module by mass spectrometry under ambient conditions. The method has been evaluated for both qualitative and quantitative analysis of DCD in powdered milk. Variables including experimental apparatus, DART gas heater temperature, sample presentation speed, and vacuum pressure were investigated. The quantitative method was validated with respect to linearity, sensitivity, repeatability, precision, and accuracy by using external standards. After optimization of these parameters, a limit of detection (LOD) of 100 μg kg–1 was obtained for DCD with a linear working range from 100 to 10000 μg kg–1 and a satisfactory correlation coefficient (R2) of 0.9997. Good recovery (80.08%–106.47%) and repeatability (RSD = 3.0%–5.4%) were achieved for DCD. The DART/Q-TOF MS/MS-based method provides a rapid, efficient, and powerful scheme to analyze DCD in powdered milk with limited sample preparation, thus reducing time and complexity of quality control.
Co-reporter:Tianyang Guo, Yuanbo Liu, Yanxiu Wei, Xiang Ma, Qiuming Fan, Jun Ni, Zequn Yin, Jiahui Liu, Sai Wang, Yiyang Dong, Jichuan Zhang, Liqun Zhang, Haijia Su, Tianwei Tan
Journal of Chromatography B 2015 Volume 1004() pp:17-22
Publication Date(Web):1 November 2015
DOI:10.1016/j.jchromb.2015.09.007
•First, we aimed at enabling a simultaneous gel permeation chromatography (GPC) method to analyze the content and molecular-weight distribution (MWD) of natural trans-1,4-polyisoprene (TPI) from Eucommia ulmoides Oliver.•Second, we investigated TPI from multiple plant issues of E. ulmoides, such as leaves, fruit coatings and bark, and explored the MWD relationship among them.•Results showed that because of higher yield and higher MW, fruit coating was more suitable for rubber industry use and turned out to be a promising source of natural TPI.Natural trans-1,4-polyisoprene (TPI) as a functional biomaterial has aroused great interest for rubber industrial product use. Here, we proposed a method that enables simultaneous analysis of the content and molecular-weight distribution (MWD) of natural TPI by gel permeation chromatography (GPC). The natural TPIs were collected from leaves, fruit coatings and bark of Eucommia ulmoides Oliver (E. ulmoides) through toluene extraction followed by ethanol purification. The results of TPI contents from leaves and fruit coatings were shown ca. 3.5% and 13.8%, respectively. Accordingly, limits of detection (LODs) of TPI were 0.58 mg/mL from leaves and 0.47 mg/mL from fruit coatings. The MWDs of TPI demonstrated a bimodal distribution from leaves, a unimodal distribution from bark, and a unimodal distribution with a tiny peak shoulder from fruit coatings. In real-life E. ulmoides analysis, the results from three independent methods (GPC, gravimetric method, and infrared spectroscopy) were obtained with good consistency.
Co-reporter:Sai Wang, Jiahui Liu, Wei Yong, Qilong Chen, Liya Zhang, Yiyang Dong, Haijia Su, Tianwei Tan
Talanta 2015 Volume 131() pp:562-569
Publication Date(Web):January 2015
DOI:10.1016/j.talanta.2014.08.028
•An aptasensor was developed to detect tetracycline in honey with high-throughput.•Detailed optimization was performed for assay conditions.•An improved operation procedure of dc-ELAA was carried out for the first time.•The aptasensor presented a good limit of detection and a wide linear range.•The ic-ELAA and dc-ELAA for TC detection in honey was compared preliminarily.Tetracycline (TC) is a common antibacterial agent used for prevention and control of animal diseases. The increasing concern about TC residue in food demands high-performing analytical techniques for food quality assessment. Biosensors represent a promising tool for food safety analysis as they can fulfill some demand that the conventional methods do not attain. In this study, a novel colorimetric aptasensor was developed for sensitive detection of TC in honey. The aptasensor was based on a modified direct competitive enzyme-linked aptamer assay (dc-ELAA) scheme utilizing a 76mer single-stranded DNA (ssDNA) aptamer selected by Systematic Evolution of Ligands by Exponential Enrichment (SELEX). The optimized aptasensor showed a good limit of detection (LOD of 0.0978 ng/mL), a wide linear range (0.1–1000 ng/mL) toward TC in honey, with good recoveries (92.09–109.7%) in TC-spiked honey, and was compared with an indirect competitive assay-based aptasensor and validated with a standard ELISA. The biosensor based on dc-ELAA with good limit of detection and simplicity can be applied for high-throughput detection of TC in food.
Co-reporter:Qilong Chen, Jia-Hui Liu, Sai Wang, Liya Zhang, Yiyang Dong, Kazuma Mawatari and Takehiko Kitamori
RSC Advances 2014 vol. 4(Issue 75) pp:39894-39896
Publication Date(Web):06 Aug 2014
DOI:10.1039/C4RA05386A
We present a novel method to analyze clenbuterol based on a competitive microfluidic immunoassay scheme with a micro-ELISA system, and obtain a limit of detection that is less than 0.1 ng ml−1 with a quantitative working range of 0.1 ng ml−1 to 27.0 ng ml−1. The approach was envisaged to be a promising method for efficient onsite clenbuterol control with good sensitivity and portability.
Co-reporter:Sai Wang, Wei Yong, Jiahui Liu, Liya Zhang, Qilong Chen, Yiyang Dong
Biosensors and Bioelectronics 2014 Volume 57() pp:192-198
Publication Date(Web):15 July 2014
DOI:10.1016/j.bios.2014.02.032
•An aptasensor was developed to detect tetracycline in honey with simplicity.•Detailed stepwise optimization for working conditions was carried out.•The biosensor presented superior sensitivity and a relatively wide linear range.•The biosensor might be utilized for high-throughput TC detection.Tetracycline (TC) is widely used for prevention and control of animal diseases for its broad spectrum antimicrobial activity and low cost, but its abuse can seriously affect human health and may result in trade loss. Thus there is an imperative need to develop high-performing analytical technique for TC detection. In this study, we developed a biosensor based on an indirect competitive enzyme-linked aptamer assay (ic-ELAA). A 76mer single-stranded DNA (ssDNA) aptamer, selected by Systematic Evolution of Ligands by Exponential Enrichment (SELEX), was applied for the recognition and detection of TC in honey. The limit of detection was 9.6×10−3 ng/mL with a linear working range from 0.01 to 100 ng/mL toward TC in honey, and a mean recovery rate of 93.23% in TC-spiked honey was obtained. This aptasensor can be applied to detect TC residue in food with high sensitivity and simplicity, and it is prospective to develop useful ELAA Kits for TC determination in food.
Co-reporter:Yi-yang DONG, Jia-hui LIU, Sai WANG, Qi-long CHEN, ... Tian-wei TAN
Journal of Integrative Agriculture (November 2015) Volume 14(Issue 11) pp:2231-2242
Publication Date(Web):1 November 2015
DOI:10.1016/S2095-3119(15)61123-6
Access to security and safe food is a basic human necessity and essential for a sustainable world. To perform hi-end food safety analysis and risk assessment with state of the art technologies is of utmost importance thereof. With applications as exemplified by microfluidic immunoassay, aptasensor, direct analysis in real time, high resolution mass spectrometry, benchmark dose and chemical specific adjustment factor, this review presents frontier food safety analysis and risk assessment technologies, from which both food quality and public health will benefit undoubtedly in a foreseeable future.
Co-reporter:Tianyang Guo, Pingping Fang, Juanjuan Jiang, Feng Zhang, Wei Yong, Jiahui Liu, Yiyang Dong
Journal of Chromatography A (4 November 2016) Volume 1471() pp:27-33
Publication Date(Web):4 November 2016
DOI:10.1016/j.chroma.2016.09.073
Co-reporter:Tianyang Guo, Pingping Fang, Juanjuan Jiang, Feng Zhang, Wei Yong, Jiahui Liu, Yiyang Dong
Journal of Chromatography A (4 November 2016) Volume 1471() pp:27-33
Publication Date(Web):4 November 2016
DOI:10.1016/j.chroma.2016.09.073
•A rapid screening and quantification method for pesticides and adulterants in wine.•The first time to combine DART with QqQ-MS to detect pesticides and adulterants.•The simple modified QuEChERS preparation procedure to shorten the time of analysis.•No column used for separation.A rapid method to screen and quantify multi-class analytic targets in red wine has been developed by direct analysis in real time (DART) coupled with triple quadruple tandem mass spectrometry (QqQ-MS). A modified QuEChERS (Quick, Easy, Cheap, Effective, Rugged, and Safe) procedure was used for increasing analytical speed and reducing matrix effect, and the multiple reaction monitoring (MRM) in DART-MS/MS ensured accurate analysis. One bottle of wine containing 50 pesticides and 12 adulterants, i.e., preservatives, antioxidant, sweeteners, and azo dyes, could be totally determined less than 12 min. This method exhibited proper linearity (R2 ≥ 0.99) in the range of 1–1000 ng/mL for pesticides and 10–5000 ng/mL for adulterants. The limits of detection (LODs) were obtained in a 0.5–50 ng/mL range for pesticides and 5–50 ng/mL range for adulterants, and the limits of quantification (LOQs) were in a 1–100 ng/mL range for pesticides and 10–250 ng/mL range for adulterants. Three spiked levels for each analyte in wine were evaluated, and the recoveries were in a scope of 75–120%. The results demonstrated DART-MS/MS was a rapid and simple method, and could be applied to rapid analyze residual pesticides and illegal adulterants in a large quantities of red wine.